Publications

Husain Poonawala, Yu Zhang, Sravya Kuchibotla, Anna G. Green, Daniela Maria Cirillo, Federico Di Marco, Andrea Spitlaeri, Paolo Miotto, Maha R. Farhat (2024). Transcriptomic responses to antibiotic exposure in Mycobacterium tuberculosis. In JAAC.

Anna G. Green, Roger Vargas Jr, Maximillian G. Marin, Luca Freschi, Jiaqi Xie, Maha R. Farhat (2023). Analysis of Genome-Wide Mutational Dependence in Naturally Evolving Mycobacterium tuberculosis Populations. In MBE.

Anna G. Green, Chang Ho Yoon, Michael L. Chen, Yasha Ektefaie, Mack Fina, Luca Freschi, Matthias I. Groeschel, Isaac Kohane, Andrew Beam, Maha R. Farhat (2022). A convolutional neural network highlights mutations relevant to antimicrobial resistance in Mycobacterium tuberculosis. In Nature Communications.

Anna G. Green, Hadeer Elhabashy, Kelly P. Brock, Rohan Maddamsetti, Oliver Kohlbacher, Debora S. Marks (2021). Large-scale discovery of protein interactions at residue resolution using co-evolution calculated from genomic sequences. In Nature Communications.

Thomas A. Hopf, Anna G. Green, Benjamin Schubert, Sophia Mersmann, Charlotta P. I. Schaerfe, John B. Ingraham, Agnes Toth-Petroczy, Kelly P. Brock, Adam J. Riesselman, Perry Palmedo, Chan Kang, Robert Sheridan, Eli J. Draizen, Christian Dallago, Chris Sander, Debora S. Marks (2018). The EVcouplings Python framework for coevolutionary sequence analysis. In Bioinformatics.

John M. Nicoludis, Anna G. Green, Sanket Walujkar, Elizabeth J. May, Marcos Sotomayor, Debora S. Marks, Rachelle Gaudet (2018). Interaction specificity of clustered protocadherinsinferred from sequence covariation andstructural analysis. In PNAS.