Posters, Publications, & Presentations
Publications
- Pamela Clark, Jessica Grant, Samantha Monastra,
Filip Jagodzinski, Ileana Streinu. Periodic
Rigidity of Protein Crystal Structures. 2nd
IEEE International Conference on Computational Advances
in Bio and Medical Sciences (ICCABS 2012), Las Vegas,
February 2012.
- Filip Jagodzinski, Jeanne Hardy, Ileana
Streinu. Using Rigidity Analysis to
Probe Mutation-Induced Structural Changes
in Proteins. Proceedings,
Bioinformatics and Biomedicine Workshops
(BIBMW), 2011 IEEE International Conference
(BIBM), Atlanta, USA, 2011; 432-437.
- Naomi Fox, Filip Jagodzinski, Yang Li,
Ileana Streinu. KINARI-Web: A Server for Protein
Rigidity Analysis, Nucleic Acids Research, 39
(Web Server Issue), 2011. PDF
- Filip Jagodzinski and Oliver Brock. Towards a
Mechanistic View of Protein Motion. Proceedings,
46th IEEE Conference on Decision and Control, Special
Session on Control and Optimization in Macro-molecular
Folding and Assocation, New Orleans, USA, December
2007; 4557-4562. PDF
- Marcos André Gonçalves, Ganesh
Panchanathan, Unnikrishnan Ravindranathan, Aaron Krowne,
Edward A. Fox, Filip Jagodzinski and Lillian
N. Cassel. The XML Log Standard for Digital
Libraries: Analysis, Evolution, and Deployment.
Third ACM/IEEE-CS Joint Conference on Digital Libraries,
JCDL, 2003: 312-314. PDF
- Tatton WG, Chalmers-Redman RM, Elstner M, Leesch W,
Jagodzinski FB, Stupak DP, Sugrue MM, Tatton NA.
Glyceraldehyde-3-phosphate dehydrogenase in
neurodegeneration and apoptosis signaling. Journal
of Neural Transmissions Supplemental 2000;(60):77-100.
White Papers, Master's Thesis
- Filip Jagodzinski, Grid Rainfall
Disaggregation Toward a Patch-Based Ensemble Kalman
Filter for Soil Moisture Data
Assimilation.Goddard Earth Science and
Technology Center (GSSP) Summer Project. (Goddard Space
Flight Center, Summer Internship, 2003) PDF
- Filip Jagodzinski, The Analysis of Autonomous
Planners and Their Scalability Onto Spacecraft With Limited Energy and
Computational Resources, Master's Thesis, Villanova
University, 2003.
Acknowledged in publications
- Q. D. Wang, E. V. Gotthelf and C. C. Lang. A
faint discrete source origin for the highly ionized iron
emission from the Galactic Centre region. Nature
415, 148-150, 10 January 2002. (reference to help in
data calibration and analysis in the Acknowledgement
section) PDF
Sample Lectures/Tutorial Materials
Sample Presentations
- Looking for Little Green
Men
Computational Biology Laboratory
Meeting, 01 October
2007
Slides (PDF)
- A Developmental Genetics-Inspired Approach
to Robot Control
LPR Presentation, 29 June
2007.
Slides (PDF)
- Articulated-Body Forward Dynamics, Adaptive
Dynamics ... & Proteins
Computational
Biology Lab Meeting, 26 April
2007
Slides (PDF)
- Pan troglodytes, Homo neanderthalensis, &
Homo sapiens: DNA Sequencing and the Origin Of
Modern Humans
Computational Biology Lab
Meeting, 28 November
2006
Slides (PDF)
Tutorials
- Analyzing protein flexibility: an introduction
to combinatorial rigidity methods and applications
With Ileana Streinu and Naomi Fox; BIBM 2011,
14 November 2011
Slides (PDF),
Announcement (PDF)
- Modeling Biological Systems; Opportunities
for Computer Scientists
RBO Tutorial Series; 25 June
2007
Slides (PDF)
Samples of Posters - at Scientific Meetings and for Departmental Service
- How Hydrogen Bond Redundancy Affects Protein
Flexibility
2009 Protein Society Annual
Meeting, Boston,
MA
Poster (PDF)
- Using a Mechanistic Perspective to Simulate
Protein Backbone Motion
2007 Protein Society
Annual Meeting, Boston,
MA
Poster (PDF)
- Robotics Inspired Proteomics
USC
CHARMM Summer Program, August
2006
Poster (PDF)
- Computational Biology; Department of
Computer Science at UMass Amherst
2007 Protein Society Annual Meeting,
Grad. Fair, Boston,
MA
Poster (PDF)
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